PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC43820_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 93aa    MW: 10756.8 Da    PI: 10.4114
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC43820_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.41.1e-203584255
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                 +y+GVr+++ +g+W+AeIrdp     + +r++lg+f tae Aa a+++a++k++g
  RrC43820_p1 35 HYRGVRQRP-WGKWAAEIRDPQ----KaARVWLGTFETAEAAALAYDEAALKFKG 84
                 69*******.**********93....36************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.19E-233592IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.8E-343593IPR001471AP2/ERF domain
SMARTSM003804.7E-343593IPR001471AP2/ERF domain
PROSITE profilePS5103224.9483592IPR001471AP2/ERF domain
PfamPF008475.6E-153584IPR001471AP2/ERF domain
CDDcd000189.84E-213593No hitNo description
PRINTSPR003674.1E-123647IPR001471AP2/ERF domain
PRINTSPR003674.1E-125874IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 93 aa     Download sequence    Send to blast
MFLLLKIKVY IVYISIYMRL IICVLVVEGN LRKIHYRGVR QRPWGKWAAE IRDPQKAARV  60
WLGTFETAEA AALAYDEAAL KFKGSKAKLN FPE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-273592260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-273592563ATERF1
3gcc_A2e-273592563ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1891952e-78AC189195.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB004B12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013738647.11e-41PREDICTED: ethylene-responsive transcription factor ERF115-like
SwissprotQ9FH541e-40EF114_ARATH; Ethylene-responsive transcription factor ERF114
TrEMBLA0A078CT171e-41A0A078CT17_BRANA; BnaA03g02000D protein
STRINGBra005932.1-P4e-41(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.12e-30ERF family protein